Team Julie PANNEQUIN
Signalization, plasticity and cancer

The team works on the molecular mechanisms involved in different stages of colorectal cancer progression to potentially find new therapeutic targets. Thanks to close interactions with the clinicians and new technologies, the different translational projects focus on a better understanding of the role of the microenvironment in the early heterogeneity of tumors and the mechanisms implemented by tumor cells as well as cancer stem cells, to resist treatments, and finally the mechanisms involved in the dissemination and recurrence of CRC.
Colorectal cancer (CRC) is the 3rd most common cancer in men, the 2nd most common cancer in women and is responsible for more than 17,000 deaths per year in France. At any stage, nearly one in two patients recurs within 5 years of treatment. Thus, in the team, we are interested in better understanding the mechanisms of tumor progression, response and resistance to treatments and recurrence. Our research is divided into three main areas: The first focuses on the chemoresistance of tumor cells and in particular that of cancer stem cells (SCCs) and the deciphering of the underlying mechanisms in order to identify ways to sensitize these cells to the different chemotherapy agents. The second axis proposes to study the heterogeneity of precancerous lesions and the role of the microenvironment in tumor progression. Finally, tumor dissemination is the subject of the third axis, with the focus on the characterization of circulating tumor cells, early dissemination, dormancy and tumor recurrence. The team has acquired recognized expertise in the ex vivo model of tumor organoids derived from patient samples (primary tumors, metastases, blood) and also in the exploitation of mouse models (subcutaneous or orthotopic xenografts and spontaneous models of colorectal tumorigenesis. The notion of translational research is at the heart of all the projects thanks to the presence of two gastroenterological clinicians who are experts in digestive oncology, Prof. Samalin (Digestive Oncologist at the ICM) and Dr. Bourgaux (Clinician at the Nîmes University Hospital). Finally, our team is very strongly committed to the SUNRiSE Network, which brings together many French teams working on the theme of solid tumor cancer stem cells.

The team uses new techniques, in vivo and in vitro models of 3D organoids and bioinformatics tools for translational research and the discovery of new therapeutic targets. The team works on different stages of colorectal cancer: 1/ The involvement of colorectal adenoma heterogeneity in cancer progression; 2/ The mechanisms of dissemination to metastatic organs; 3/ The role of cancer stem cells in resistance to treatment; 4/ The mechanisms involved in recurrence.



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2010Habilitation to Supervise Research (HDR) - University of Montpellier - France
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2001PhD in Biology-Health - University of Montpellier - France
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2018-CNRS Research Director (DR2)
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2012-Head of the “Signaling, Plasticity and Cancer” team - Institute of Functional Genomics (IGF) - Montpellier - France
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2008CNRS Research Associate (CR1) - Institute of Functional Genomics (IGF) - Montpellier - France
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2007-2008Project Manager (CDI) - BioRéalités - Montpellier - France
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1998-2001PhD student (Dir. J. Martinez) - Laboratory of Peptides and Proteins (LAPP, UMR 5810) - Faculty of Pharmacy - Montpellier - France
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2017Prize of National Academy of Medicine (Gallet et Breton)
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2015"Chercheur d’avenir" laureate awarded by the Languedoc-Roussillon region
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2015Prize winner from French Society of Gastroenterology (SNFGE)
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2008Young Researcher Prize "Jean & Madeleine Schaeverbeke" from the Fondation de France
- I worked for more than 20 years on colorectal cancer with a specific focus on the 2 main clinical issues namely tumor recurrence and dissemination which leads to metastasis development. My topics of interest are tumor heterogeneity and plasticity which are highly involved in relapse and metastasis development. In this line I am one of the founders of the SunRise network (https://www.sunrise-network.fr/ ) which aims at federating researchers, clinicians and industrials on these topics.
- I have dedicated many years to establish in vitro and in vivo models relevant for the human pathology.
- Techniques routinely used in the lab are cytometry, immunostainings and molecular biology and more recently we have started to use cutting edge technologies such as scRNA sequencing and spatial transcriptomic.
- We have several collaborations with clinicians and have welcomed a digestive oncologist in the team in order to perform relevant translational research.



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2013PhD in Biomedicine - Universitat Pompeu Fabra - UPF - Barcelona - Spain
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2009MSc in Biomedical Research - Universitat Pompeu Fabra - UPF - Barcelona - Spain
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2008BSc in Human Biology - Universitat Pompeu Fabra - UPF - Barcelona - Spain
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2023-Research Associate at CNRS - Institut de Génomique Fonctionelle (IGF) - Montpellier - France
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2017-Associate Professor - Master in Bioinformatics and Biostatistics - Universitat Oberta de Catalunya (UOC) - Barcelona - Spain
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2023Postdoctoral Researcher - Signalling, Plasticity and Cancer Group - Institut de Génomique Fonctionelle (IGF) - Montpellier - France
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2021-2022Postdoctoral Researcher - Cancer Bioinformatics and Systems Biology Group - Institut de Recherche en Cancérologie de Montpellier (IRCM) - Montpellier - France
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2018-2021Research Associate - Department of Medical Genetics - University of Cambridge - UK
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2016-2018Postdoctoral Researcher - Liver Cancer Translational Research Lab - Institut d’Investigacions Biomèdiques August Pi i Sunyer (IDIBAPS) - Barcelona - Spain
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2013-2016Postdoctoral Researcher - Cardiovascular Research Institute / Institute for Human Genetics - University of California San Francisco (USCF) -USA
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2009-2013PhD student - Genomics and Disease Lab - Center for Genomic Regulation (CRG) - Universitat Pompeu Fabra - Barcelona - Spain
- - Computational analysis of next-generation sequencing data (DNA sequencing, bulk RNA sequencing, single-cell RNA sequencing)
- - Development of bioinformatics tools for cancer genomics and transcriptomics analysis
- - Role of aneuploidy and other structural genomic variants (SVs) in cancer initiation and progression
- - Impact of aneuploidy and other SVs in shaping the tumor microenvironment







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2009Habilitation to Supervise Research (HDR) - University of Montpellier - France
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2000PhD - Biochemistry & Cell Biology - University of Montpellier - France
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2012-Research Fellow at INSERM - Institute of Functional Genomics - Montpellier - France
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2001-2012Research Fellow at INSERM - INSERM U632 - Montpellier - France
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2000-2001Postdoctoral fellow - NIEHS - University of North Carolina - Durham - USA
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1997-2000PhD student - INSERM U128 - Montpellier - France
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2005ISSX European New Investigator Award in Honor of Karl J. Netter
- I focus my studies on Cancer recurrence, Cancer stem cell, Colorectal cancer, the nuclear Pregnane X receptor (NR1I2) and PROTACs.
- Laboratory techniques
- Cultures of cell lines and primary cultures
- Molecular biology: PCR, qPCR, Western Blot, EMSA, Cytometry and Cell-sorter
- Work in L2 sector
- Designer (Level 1) and Surgery












































- Homayed Z, Belthier G, Lahlou T, Bassaganyas L, Sidot E, Giroux P, Series J, Bouclier C, Bansard L, Gerbe F, Pan C, Newger M, Bourgaux JF, Guillermet-Guibert J, Lacroix M, Le Cam L, Fre S, Ridgway R, Sansom OJ, Erturk A, Jay P, Häußler D, Krüger A, Werb Z, Turtoi A, Gregoire D, Lagarrigue F, Bonnans C and Pannequin J. Early Dissemination Highly Enhances Liver Metastasis Development During Intestinal Tumorigenesis. Cancer Cell. In press.
- Therizols G, Bash-Imam Z, Panthu B, Machon C, Vincent A, Ripoll J, Nait-Slimane S, Chalabi-Dchar M, Gaucherot A, Garcia M, Laforêts F, Marcel V,Boubaker-Vitre J, Monet MA, Bouclier C, Vanbelle C, Souahlia G, Berthel E,Albaret MA, Mertani HC, Prudhomme M, Bertrand M, David A, Saurin JC, Bouvet P,Rivals E, Ohlmann T, Guitton J, Dalla Venezia N,Pannequin J, Catez F, Diaz JJ.Alteration of ribosome function upon 5-fluorouracil treatment favors cancer celldrug-tolerance. Nat Commun. 2022 Jan 10;13(1):173. doi:10.1038/s41467-021-27847-8. PMID: 35013311;
- Belthier G, Homayed Z, Grillet F, Duperray C, Vendrell J, Krol I, Bravo S,Boyer JC, Villeronce O, Vitre-Boubaker J, Heaug-Wane D, Macari-Fine F, Smith J,Merlot M, Lossaint G, Mazard T, Portales F, Solassol J, Ychou M, Aceto N,Mamessier E, Bertucci F, Pascussi JM, Samalin E, Hollande F, Pannequin J. CD44v6Defines a New Population of Circulating Tumor Cells Not Expressing EpCAM.Cancers (Basel). 2021 Oct 2;13(19):4966. doi: 10.3390/cancers13194966. PMID:34638450;
- Mitoyan L, Chevrier V, Hernandez-Vargas H, Ollivier A, Homayed Z, PannequinJ, Poizat F, De Biasi-Cador C, Charafe-Jauffret E, Ginestier C, Guasch G. A stemcell population at the anorectal junction maintains homeostasis and participatesin tissue regeneration. Nat Commun. 2021 May 12;12(1):2761. doi:10.1038/s41467-021-23034-x. PMID: 33980830;
- Giraud J, Foroutan M, Boubaker-Vitre J, Grillet F, Homayed Z, Jadhav U,Crespy P, Breuker C, Bourgaux JF, Hazerbroucq J, Pignodel C, Brulin B,Shivdasani RA, Jay P, Hollande F, Pannequin J. Progastrin production transitionsfrom Bmi1+/Prox1+ to Lgr5high cells duringearly intestinal tumorigenesis. Transl Oncol. 2021 Feb;14(2):101001. doi:10.1016/j.tranon.2020.101001. Epub 2020 Dec 23. PMID: 33360299;
- Müller S, Versini A, Sindikubwabo F, Belthier G, Niyomchon S, Pannequin J,Grimaud L, Cañeque T, Rodriguez R. Metformin reveals a mitochondrial copperaddiction of mesenchymal cancer cells. PLoS One. 2018 Nov26;13(11):e0208213. PMID: 30399175;
- Grillet F, Bayet E, Villeronce O, Zappia L, Lagerqvist EL, Lunke S, Charafe-Jauffret E, Pham K, Molck C, Rolland N, Bourgaux JF, Prudhomme M, Philippe C,Bravo S, Boyer JC, Canterel-Thouennon L, Taylor GR, Hsu A, Pascussi JM, Hollande F, Pannequin J. Circulating tumour cells from patients with colorectal cancer have cancer stem cell hallmarks in ex vivo culture. 2017Oct;66(10):1802-1810. doi: 10.1136/gutjnl-2016-311447. Epub 2016 Jul 25. PMID:27456153;
- Planque C, Rajabi F, Grillet F, Finetti P, Bertucci F, Gironella M, LozanoJJ, Beucher B, Giraud J, Garambois V, Vincent C, Brown D, Caillo L, Kantar J,Pelegrin A, Prudhomme M, Ripoche J, Bourgaux JF, Ginestier C, Castells A,Hollande F, Pannequin J, Pascussi JM. Pregnane X-receptor promotes stem cell-mediated colon cancer relapse. 2016 Aug 30;7(35):56558-56573. doi:10.18632/oncotarget.10646. PMID: 27448961;
- Giraud J, Failla LM, Pascussi JM, Lagerqvist EL, Ollier J, Finetti P,Bertucci F, Ya C, Gasmi I, Bourgaux JF, Prudhomme M, Mazard T, Ait-Arsa I,Houhou L, Birnbaum D, Pélegrin A, Vincent C, Ryall JG, Joubert D, Pannequin J,Hollande F. Autocrine Secretion of Progastrin Promotes the Survival and Self-Renewal of Colon Cancer Stem-like Cells. Cancer Res. 2016 Jun 15;76(12):3618-28. doi: 10.1158/0008-5472.CAN-15-1497. Epub 2016 May 4. PMID: 27197176.
Heterogeneity and plasticity in tumor dissemination and resistance
Principal investigator
Julie PANNEQUIN
Development of Innovative Strategies for Targeting the PXR Nuclear Receptor in the Treatment of Colorectal Cancer
Principal investigator
Jean-Marc PASCUSSI
Study of the role of the microenvironment in tumor heterogeneity and early dissemination of colorectal cancer
Principal investigator
Caroline BONNANS
Circulating Tumor DNA (ctDNA) monitoring for analysis of Colorectal Cancer Recurrences
Principal investigator
Laia BASSAGANYAS